Mumbai City came from a goal down to beat Gokulam Kerala 2-1 in their Group C match of the Kalinga Super Cup in Bhubaneswar on Thursday.
The 12 ISL clubs have gained direct entry into the Super Cup, while the I-League franchises will play the qualifiers to determine the remaining four teams.
Mumbai City FC began their AFC Champions League (ACL) campaign on a disappointing note as they suffered 0-2 defeat at the hands of debutants Nassaji Mazandaran of Iran in Pune on Monday.
The Indian men's football team had won gold medals at the New Delhi 1951 and Jakarta 1962 Asian Games, while clinching a bronze at Bangkok 1970
For Mohun Bagan, the goal-scorers were Jason Cummings, Manvir Singh and Anwar Ali, whereas Jorge Pereyra Diaz scored the consolation goal for Mumbai.
Mumbai City FC are set to face Mohun Bagan Super Giant in the fourth and final quarter-final of the 132nd Durand Cup.
Neymar is expected to make his debut against Al-Raed later on Thursday.
Cristiano Ronaldo's Al-Nassr can be drawn in the same group as ISL franchise Mumbai City in the AFC Champions League draw.
Cristiano Ronaldo's Al-Nassr left it late to book their passage into the Group Stage of the AFC Champions League.
Defending Indian Super League champions Mohun Bagan and Shield winners Mumbai City FC will renew their rivalry when they clash in the Durand Cup quarterfinals.
Mumbai City FC qualified for the quarterfinals of the ongoing Durand Cup with a dominating 4-0 victory over Indian Navy FT on Saturday
Mumbai City FC cruised to a second consecutive victory with a 5-0 win over Jamshedpur FC.
Mumbai City FC (MCFC) defeated local favourites Mohammedan Sporting 3-1 in the Durand Cup in Kolkata
Mumbai City FC will now become the first Indian club to appear in the AFC Champions League group stages on more than one occasion
Star striker Sunil Chhetri struck a late goal as a substitute to help Bengaluru FC eke out a 1-0 win over Mumbai City FC in the first leg of the Indian Super League (ISL) semi-final in Mumbai on Tuesday.
With first place sealed, Mumbai City FC will travel to Bengaluru FC on February 15. FC Goa remain in fifth place but within touching distance of Odisha FC and Bengaluru FC
The win took Mumbai two points clear of Hyderabad FC at the top, while Chennaiyin FC stay in seventh place, still five points off the play-off spot.